Transcriptome data used for Gene annotation

Illumina Technology

NoSample descriptionNo. of Reads
1Seed37,059,824
2Root (1yr)33,390,674
3Leaf (1yr)34,200,406
4Root (6yr)33,991,964
5Rhizome(6yr)34,968,250
6Lateral root (6yr)33,938,598
7Leaf (6yr)39,112,604
8Flower fruit(4~6yr)33,142,204
9Immature fruit (4~6yr)35,760,836
10Mature fruit(4~6yr)31,834,886
11Dormant root (7yr)37,679,518
12Leaf (1yr)40,201,970
13Seeds (Stratified; not imbibed)14,589,896
14Seedling of 30 day old14,990,730
15shoot (without leaves; of 6~7 year old plants)12,531,224
16root (1-year-old), repeat#214,967,974
17root (1-year-old), repeat#315,363,222
18main roots (6~7-year-old), repeat#212,654,102
19rhizomes (6~7-year-old), repeat#217,900,886
20laternal roots (6~7-year-old), repeat#218,047,934
21main roots (6~7-year-old), repeat#316,326,086
22rhizomes (6~7-year-old), repeat#314,435,664
23laternal roots (6~7-year-old), repeat#316,166,344
24whole seedling (shoot+leaves+root; 1-year-old; control for abiotic stress treatment), repeat#112,070,780
25whole seedling (shoot+leaves+root; 1-year-old; control for abiotic stress treatment), repeat#214,398,724
26whole seedling treated with 4'C for 24hr, repeat#114,089,112
27whole seedling treated with 4'C for 24hr, repeat#215,195,408
28whole seedling treated with 100mM NaCl for 24hr, repeat#111,624,426
29whole seedling treated with 100mM NaCl for 24hr, repeat#215,446,512
30whole seedling treated air-drying for 24hr, repeat#111,509,386
31whole seedling treated air-drying for 24hr, repeat#212,001,014
32leaves (1-year-old; control for heat-treatment), repeat#212,010,556
33leaves (1-year-old; control for heat-treatment), repeat#314,219,204
34leaves (1-year-old) treated with 30'C for 1 week, repeat#112,797,522
35leaves (1-year-old) treated with 30'C for 1 week, repeat#214,303,250
36leaves (1-year-old) treated with 30'C for 1 week, repeat#314,795,776
37leaves (1-year-old) treated with 30'C for 3 weeks, repeat#214,670,068
38leaves (1-year-old) treated with 30'C for 3 weeks, repeat#318,163,348
39Adventitious root (4W old) 90,242,024

PacBio (Iso seq)

NoTissuesNo. of contigs
122 samples including various tissues and treatment117,931
2"151,091